Where Data Meets Computer Science


The GitHub: bioimage project is focused on developing a comprehensive set of MATLAB functions for bio-image analysis and processing. Following methods are explored in depth, with case studies, and more:

  • Color spaces, color space transformations,
  • Spatial filtering: point, line and edge detectors,
  • Frequency filtering: lowpass filters, highpass and other filters,
  • Mathematical morphology,
  • Image segmentation: thresholding, region growing, region splitting and merging,
  • Image analysis: texture analysis, features extraction.


BODICCellSegmentation2D – Toolbox to Automatically Extract Bacterial Cells from DIC Microscopy Images.



BOFungalNetwork2D – Toolbox to Automatically Extract Complex Fungal Networks.